Currently, diagnosing type 2 diabetes (T2D) is a great challenge. Thus, there is a need to find rapid, simple, and reliable analytical methods that can detect the disease at an early stage. The aim of this work was to shed light on the importance of sample collection options, sample preparation conditions, and the applied capillary electrophoresis bioanalytical technique, for a highresolution determination of the N‐glycan profile in human blood samples of patients with type 2 diabetes (T2D). To achieve the profile information of these complex oligosaccharides, linked by asparagine to hIgG in the blood, the glycoproteins of the samples needed to be cleaved, labelled, and purified with sufficient yield and selectivity. The resulting samples were analyzed by capillary electrophoresis, with laser‐induced fluorescence detection. After separation parameter optimization, the capillary electrophoresis technique was implemented for efficient N‐glycan profiling of whole blood samples from the diabetic patients. Our results revealed that there were subtle differences between the N‐glycan profiles of the diabetic and control samples; in particular, two N‐glycan structures were identified as potential glycobiomarkers that could reveal significant changes between the untreated/treated type 2 diabetic and control samples. By analyzing the resulting oligosaccharide profiles, clinically relevant information was obtained, revealing the differences between the untreated and HMG‐CoA reductase‐inhibitor‐treated diabetic patients on changes in the N‐glycan profile in the blood. In addition, the information from specific IgG Nglycosylation profiles in T2D could shed light on underlying inflammatory pathophysiological processes and lead to drug targets.
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